PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA00g85880
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C2H2
Protein Properties Length: 285aa    MW: 31620.8 Da    PI: 4.7043
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA00g85880genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2130.00032153175123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 y C+ C+k+F++   L  H  +H
  CA00g85880 153 YICETCNKVFRSYQALGGHRASH 175
                 89**********99999998887 PP

2zf-C2H212.20.00056202224123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++Cp C ++Fs+   L  H r+H
  CA00g85880 202 HECPVCYRVFSSGQALGGHKRSH 224
                 79******************999 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.53E-9153224No hitNo description
PfamPF139125.4E-12153177IPR007087Zinc finger, C2H2
SMARTSM003550.03153175IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.993153180IPR007087Zinc finger, C2H2
PROSITE patternPS000280155175IPR007087Zinc finger, C2H2
PROSITE profilePS501579.328202224IPR007087Zinc finger, C2H2
PfamPF139128.5E-13202224IPR007087Zinc finger, C2H2
SMARTSM003550.22202224IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280204224IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MGLFPLQSFX SSEGEEKGKI LNFAEVGVDD SVVVLPDKES ETESSRNPTR FKRSKRVRKS  60
RKSNLLRKVT DYSETEQPVS SISETSPEED VAHCLMMLSR DKWIVQKEQV GDFYSDDDDD  120
EEEEDEEFKE ANNSDDFAVQ VKVVAKTRGR GKYICETCNK VFRSYQALGG HRASHKKIKV  180
FNSSNNNNEV VENVVSVEEK IHECPVCYRV FSSGQALGGH KRSHGIGAGA GAIVSSAKLE  240
LSRTDGTSLI DLNLPPPMED DDEIISQVEV SAVSDAEFIN NIKN*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00416DAPTransfer from AT3G60580Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016545381.10.0PREDICTED: zinc finger protein ZAT9-like
TrEMBLK4AZ251e-116K4AZ25_SOLLC; Uncharacterized protein
STRINGSolyc01g090840.2.11e-115(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10952480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.14e-39C2H2-like zinc finger protein